PCI DSS & penetration testing: Securing online retail transactions
Retailers online are prime targets for cyberattacks that aim to steal customer payment data - the risks are real and continue to grow. Read on and explore how PCI DSS and pen testing work together to help e-commerce businesses stay compliant, detect vulnerabilities, and secure transactions on their site.

More consumers are shopping online than ever before, and securing e-commerce transactions has become a top priority for retailers. The tactics that cybercriminals use to exploit vulnerabilities in payment systems and online stores are constantly evolving.
The Payment Card Industry Data Security Standard (PCI DSS) is a framework that online retailers must adhere to if they are serious about combating these threats and maintaining customer trust. A globally recognised framework, the PCI DSS outlines the necessary controls that will safeguard cardholder data during storage, processing and transmission.
Penetration testing (pen testing) is among the most critical and often most misunderstood components of PCI DSS. It’s not merely a box checking exercise, but plays a vital role in helping retailers identify security gaps before they can be exploited by malicious attackers. When pen testing is done correctly, it doesn’t just support PCI DSS compliance but helps strengthen the overall security of your security posture.
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What is PCI DSS and why it matters for online retailers
The Payment Card Industry Data Security Standard, or PCI DSS, is a set of globally recognised requirements designed to ensure that all companies that process, store, and transmit credit card data continually maintain a secure environment.
It doesn’t matter whether you’re a small independent store or a large e-com brand, if your business handles payment data directly or through a payment gateway, PCI DSS applies to you.
The stakes are even higher for online retailers as they face regular attacks from cybercriminals looking to exploit checkout flows, inject malicious code or skim payment data. By ensuring compliance with PCI DSS, retailers can help create a secure transaction environment and as a result build trust with customers, partners, and payment providers.
PCI DSS penetration testing requirements
Pen testing is outlined specifically in Requirement 11.3 as a critical component of PCI DSS and ensures that your systems are assessed using real-world attack techniques so vulnerabilities can be identified and remediated before they are exploited. Even seemingly insignificant weaknesses in applications or infrastructure could be used as part of a chain to compromise payment data or customer information.
If your organisation uses segmentation to isolate the Cardholder Data Environment (CDE) from the rest of your infrastructure, PCI DSS requires you to test those segmentation controls as part of your penetration testing. According to Requirement 11.3.4, this must be done at least annually, and after any changes to the segmentation controls. The goal is to ensure the segmentation is effective and that no systems outside the CDE can inadvertently access cardholder data. A properly implemented segmentation can reduce your PCI DSS scope, but only if its boundaries are well defined, maintained, and validated through rigorous testing.
What PCI DSS requires
Requirement | Description |
11.3 | Businesses must implement a methodology for regular penetration testing that includes both internal and external tests. |
Frequency | Annual testing must be conducted at minimum, or after any significant infrastructure or application changes. |
Scope | Pen tests should include external-facing systems, internal infrastructure, and segmentation controls (if in use). |
Put simply, your entire e-commerce environment is in scope, from the customer facing website and checkout flow, to the backend systems, APIs, cloud infrastructure, and any other internal segments that process or store sensitive cardholder data.
Pen tests should also ideally be conducted by qualified individuals or third-party providers, such as Bulletproof, who are independent of the systems being tested to ensure objectivity and accuracy.
Key threats faced by online retailers
Meeting PCI DSS standards is only one side of the security equation, understanding what you’re up against is the other, and as cyber threats evolve so quickly, even the most secure looking e-commerce platform can be vulnerable to attacks if security gaps go unnoticed.
Here are some of the more prevalent attack methods that payment data and customer accounts in retail environments are targeted with today:
Common threats to e-commerce security
Magecart attacks
Magecart attacks involve malicious JavaScript injected into online checkout pages, often via compromised third party scripts or plugins. And the goal of this attack is to stealthily collect cardholder data as it’s entered onto the page by unsuspecting customers.
Card skimming
Card skimming isn’t only a physical world threat. Nowadays, digital skimmers can exploit security weaknesses in your website’s code or payment gateway integration, to silently harvest payment information in the background.
Account takeovers (ATO)
Attackers can use stolen or re-used credentials from previous breaches to hijack user accounts through a method known as automated credential stuffing, or targeted brute-force techniques. Once inside, the attacker can access stored card details, personal data, and other information like loyalty rewards, often going unnoticed.
Broken access controls
These vulnerabilities allow users to access restricted areas, like other customer accounts, admin panels, or profile data, without proper authorisation. Often caused by misconfigured permissions or insecure direct object references (IDOR), broken access controls are one of the most common real-world issues in web applications.
How penetration testing supports PCI DSS compliance
As you’ll be aware by now, pen testing doesn’t just uncover security flaws but also plays a key role in meeting PCI DSS compliance requirements and proving your commitment to the secure handing of cardholder data.
Regular pen testing sends a clear signal to auditors, banks, and customers that you as a business are proactively addressing and preventing weaknesses in your e-commerce environment.
How penetration testing fits into the bigger picture
Prevents surprises during audits – a thorough pen test will highlight vulnerabilities in time for you to fix them before a PCI DSS assessment and avoid non-compliance.
Builds trust with third parties – regular pen testing demonstrates proactiveness and reassures banks, payment providers, and your customers that you take security very seriously.
Supports other security investments – pen testing works perfectly hand in hand with broader tech stacks such as Web Application Firewalls (WAFs) and Managed SIEM, validating their effectiveness and flagging any security gaps or misconfigurations.
Don’t just meet compliance, strengthen your defences
Achieving PCI DSS compliance is an important milestone but should be seen as the foundation of your security and not the end result. The digital landscape is fast moving, and compliance alone won’t stop cyber threats. You can go beyond box-ticking compliance with a well scoped out penetration test, adding vital depth to your defences and ensure your systems are truly secure, not just compliant.
Our security team at Bulletproof can help you scope and execute meaningful security tests, whether you're launching a new feature, integrating a third-party service, or preparing for an upcoming audit. Get in touch with our team today and schedule a personalised security review or discuss how pen testing fits into your PCI DSS strategy.

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